[1] Nashta-ali, D., Aliyari, A., Edrisi, M.A., Moghadam, A.A., Motahari, S.A. & Khalaj, B.H. Meta-aligner: Long-read alignment based on genome statistics. bioRxiv, pages 060129, Cold Spring Harbor Labs Journals, 2016.
[2] Nashta-ali, D., Motahari, S.A. & Khalaj, B.H. Breaking Lander-Waterman’s Coverage Bound. bioRxiv, pages 060384, Cold Spring Harbor Labs Journals, 2016.
[3] Najafi, A., Nashta-ali, D., Motahari, S.A., Khani, M., Khalaj, B.H. & Rabiee, H.R. Fundamental Limits of Pooled-DNA Sequencing. arXiv preprint arXiv:1604.04735, 2016.

Distributed Systems

[1] Sanjaroon, V., Farhadi, A., Khalaj, B. & Motahari, a. Estimation and Stability of Control Systems over Bandlimited AWGN and Fading Channels. Submitted to Automatica, 2016.
[2] Shariatpanahi, S.P., Motahari, S.A. & Khalaj, B.H. Multi-server coded caching. arXiv preprint arXiv:1503.00265, 2015.

Communication Systems

[1] Bagheri, H., Motahari, A.S. & Khandani, A.K. On the capacity of the half-duplex diamond channel under fixed scheduling. IEEE Transactions on Information Theory, 60(6):3544-3558, IEEE, 2014.
[2] Motahari, A.S. & Khandani, A.K. To decode the interference or to consider it as noise. IEEE Transactions on Information Theory, 57(3):1274-1283, IEEE, 2011.
[3] Ahmadzadeh, S.A., Motahari, S.A. & Khandani, A.K. Signal space cooperative communication. IEEE transactions on wireless communications, 9(4):1266-1271, IEEE, 2010.
[4] Motahari, A.S., Oveis-Gharan, S., Maddah-Ali, M.A. & Khandani, A.K. Real interference alignment: Exploiting the potential of single antenna systems. IEEE Transactions on Information Theory, 60(8):4799-4810, IEEE, 2014.
[5] Pourahmadi, V., Motahari, A.S. & Khandani, A.K. Degrees of freedom of MIMO-MAC with random access. IEEE Transactions on Communications, 61(5):1956-1967, IEEE, 2013.
[6] Motahari, A.S., Bresler, G. & David, N. Information theory of DNA shotgun sequencing. IEEE Transactions on Information Theory, 59(10):6273-6289, IEEE, 2013.
[7] Bagherikaram, G., Motahari, A.S. & Khandani, A.K. The Secrecy Capacity Region of the Gaussian MIMO Broadcast Channel. IEEE Transactions on Information Theory, 59(5):2673-2682, 2013.
[8] Pourahmadi, V., Motahari, A.S. & Khandani, A.K. Multilayer codes for broadcasting over quasi-static fading MIMO networks. IEEE Transactions on Communications, 61(4):1573-1583, IEEE, 2013.
[9] Motahari, A.S. & Khandani, A.K. Capacity bounds for the Gaussian interference channel. IEEE Transactions on Information Theory, 55(2):620-643, IEEE, 2009.
[10] Maddah-Ali, M.A., Motahari, A.S. & Khandani, A.K. Communication over MIMO X channels: Interference alignment, decomposition, and performance analysis. Information Theory, IEEE Transactions on, 54(8):3457-3470, IEEE, 2008.
[11] Motahari, A.S. & Nasiri-Kenari, M. Multiuser detections for optical CDMA networks based on expectation-maximization algorithm. IEEE transactions on communications, 52(4):652-660, IEEE, 2004.