Atomic bonded cross-chain debt

M. Tefagh, F. Bagheri, A. Khajehpour, and M. Abdi, ICBTA, 2020.

SWIFTCORE: a tool for the context-specific reconstruction of genome-scale metabolic networks

M. Tefagh and S.P. Boyd, BMC Bioinformatics, 2020.

Metabolic network reductions

M. Tefagh and S.P. Boyd, bioRxiv, 2019.

Quantitative flux coupling analysis

M. Tefagh and S.P. Boyd, J. Math. Biol., 2019.

A mathematical approach to emergent properties of metabolic networks: Partial coupling relations, hyperarcs and flux ratios

S.A. Marashi and M. Tefagh, J. Theor. Biol., 2014.


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Applications of convex optimization in metabolic network analysis
Advisor: Stephen P. Boyd